PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G0557
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 496aa    MW: 53952.5 Da    PI: 8.9924
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G0557genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-0585107123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C+k F r  nL+ H r H
  Gh_D10G0557  85 FVCEICNKGFQRDQNLQLHRRGH 107
                  89*******************88 PP

2zf-C2H212.80.00037161183123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k++  +s+ k H +t+
  Gh_D10G0557 161 WKCDKCSKRYAVQSDWKAHSKTC 183
                  58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.66E-784107No hitNo description
Gene3DG3DSA:3.30.160.601.6E-584107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01785107IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94985107IPR007087Zinc finger, C2H2
PfamPF121717.9E-585107IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
SMARTSM0035589126156IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-4149182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.66E-7156181No hitNo description
SMARTSM00355140161181IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MMKGYIVQQQ QQEVLEENMS NLTCASGEAS VSSAAGGTNY SQQYFSNPPA QAQPVKRKRN  60
QPGNPDPDAE VIALSPKTLM TTNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRTSKE  120
VRKKVYVCPE VSCVHHDPSR ALGDLTGIKK HFYRKHGEKK WKCDKCSKRY AVQSDWKAHS  180
KTCGTKEYRC DCGTLFSRRD SFITHRAFCD ALAEESSRAA IMGANTFQPG SSHTNLQVTQ  240
FNPHDIQAFS LKQEQHQRFT PLKPDIPPWL AIQPMLGAGA GLSSSSSSIF SPSLTLHENP  300
TPIPTLDPTL PPYHPTTVLS PHMSATALLQ KAAQMGATLS NKPGSSSAPA TTTAMRPHQQ  360
THVSADFVGS TNNNSTTAGF GLNLSSREEV SMGSGFIHGS THHAAESSGA PPPPSLLLQG  420
MMNSLSSPIG FDSTSFDDIA FSGILNAKKK SGTLINESFS KTTAEPENGT GNNNDHESRA  480
GGSTQGEALR RDFLAL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111123KLKQRTSKEVRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.142880.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455825.10.0PREDICTED: protein indeterminate-domain 7-like isoform X1
SwissprotQ8H1F51e-125IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A0D2T3E80.0A0A0D2T3E8_G
STRINGVIT_09s0002g02300.t011e-173(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-116indeterminate(ID)-domain 7